MmuEX0030106 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41694248-41719963:-
Coord C1 exon
chr8:41719863-41719963
Coord A exon
chr8:41711373-41711491
Coord C2 exon
chr8:41694248-41694370
Length
119 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTCTTCATATTGCAGTTT
3' ss Score
8.68
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
Exon sequences
Seq C1 exon
GAGGAGCTGGCGGCGCCCTAGCATCTCCCAGAGCACTGCGAGGCCGGTCTTTCTCTTGCTAGCTCACAGGCCTAGCTGGCGCTAATCTCTTGTCCTTGGGG
Seq A exon
TTTGATTTTCCCCAAAAGAACCGGCTGCAGCATTGTATGTCCTGATGTTTGCCTGATGTTTGTGACGGCTTCAGAGGAGAGGAGATACTCCATGTGGTCTCTCACACTTCAGAGGCAAG
Seq C2 exon
GTTGAAAACGTGCGCTTGGTAGACAGAGTGTCTTGTAAAAAGGCAGCGCTGGGAACTTTGTATCTGACGGCCACTCACGTCATATTCGTGGAAAATGCACCTGACACAAGAAAAGAAACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'2-1,'2-0,4-1
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.929 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0289315=GRAM=FE(71.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTAGCATCTCCCAGAG
R:
CCAGGTTTCTTTTCTTGTGTCAGG
Band lengths:
211-330
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types