MmuEX0030210 @ mm9
Exon Skipping
Gene
ENSMUSG00000030131 | Mug2
Description
murinoglobulin 2 [Source:MGI Symbol;Acc:MGI:99836]
Coordinates
chr6:121973873-121986112:+
Coord C1 exon
chr6:121973873-121973957
Coord A exon
chr6:121974966-121975053
Coord C2 exon
chr6:121985995-121986112
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTGAATTTATCTTGTCACAGATA
3' ss Score
6.75
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
TGCTTCCCAGATTTAATGTCGACCTGAAGGTCCCAAATGCCATCTCTGTGAATGATGAAGTGCTCCAAGTGACTGTATGTGGGAA
Seq A exon
ATATACCTATGGGAAGCCTGTTCCAGGACAGGTGAAGATAAGTATCTGCCATGAGACTGAAGCTGGATGCAAAGAAGTCAATTCCAAG
Seq C2 exon
CTAGACAACAATGGCTGCAGTACACAAGAAGTGAACATCACTGAGCTCCAATCAAAGAAAAGGAATTATGAGGTTCAGCTTTTCCATGTGAATGCAACTGTTACAGAAGAAGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030131-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
75%=50=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.025
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGGTCCCAAATGCCAT
R:
GTCCCTTCTTCTGTAACAGTTGCA
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: