BtaEX6024121 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018137 | A2M
Description
Bos taurus alpha-2-macroglobulin (A2M), mRNA. [Source:RefSeq mRNA;Acc:NM_001109795]
Coordinates
chr5:101305258-101309717:+
Coord C1 exon
chr5:101305258-101305342
Coord A exon
chr5:101308594-101308714
Coord C2 exon
chr5:101309603-101309717
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGGCAATGCTTTTATGACAGATA
3' ss Score
4.85
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
TGCTTCCTAAGTTTGAAGTACAAGTAAGAATGCCAAAGATAATCACCATCTTGGAAGAAGAGGTGCAAGTGTCCGTGTGCGGCCT
Seq A exon
ATACACTTATGGGAAGCCTGTCCCAGGACGTGTGACTATGAACATGTGCAGAAAGTACAGGAACCCTTCTAATTGTTATGGTGAAGAATCCAATGCTGTCTGTGAGAAGTTCAGTGGAGAG
Seq C2 exon
CTGAACAATGAGGGCTGCTTCTCTCAGCAAGTAAACACCAAGATCTTCCAGTTGAAGAGACAAGAGTTTGAAATGAAAATCGAAGTGGAAGCCAAGATCCAAGAAGAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018137-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.024 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCTAAGTTTGAAGTACAAGT
R:
TCCTTCTTCTTGGATCTTGGCT
Band lengths:
196-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]