MmuEX6006766 @ mm10
Exon Skipping
Gene
ENSMUSG00000030111 | A2m
Description
alpha-2-macroglobulin [Source:MGI Symbol;Acc:MGI:2449119]
Coordinates
chr6:121641989-121645008:+
Coord C1 exon
chr6:121641989-121642073
Coord A exon
chr6:121644115-121644235
Coord C2 exon
chr6:121644894-121645008
Length
121 bp
Sequences
Splice sites
3' ss Seq
TGGCAATATTCTAATAACAGATA
3' ss Score
3.74
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TGCTTCCCAAGTTTGAAGTCAAAGTTGCAGTACCAGAGACAATCACCATCCTGGAGGAAGAGATGAATGTGTCCGTGTGTGGCAT
Seq A exon
ATACACCTATGGGAAGCCTGTTCCAGGACACGTGACTGTGAACATTTGCAGAAAGTACAGTAATCCTTCTAGCTGCTTTGGTGAAGAATCGCTGGCTTTCTGTGAGAAATTCAGTCAACAG
Seq C2 exon
CTAGATGGCCGTGGCTGCTTCTCACAGCTAGTGAAAACCAAGTCTTTCCAGCTAAAGAGGCAAGAGTATGAGATGCAGCTTGATGTGAATGCCAAGATCCAAGAAGAAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030111-'4-8,'4-7,9-8=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCCCAAGTTTGAAGTCA
R:
TCCTTCTTCTTGGATCTTGGCA
Band lengths:
196-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types