MmuEX0030539 @ mm9
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75134218-75135949:+
Coord C1 exon
chr9:75134218-75134398
Coord A exon
chr9:75135092-75135552
Coord C2 exon
chr9:75135856-75135949
Length
461 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCATTTTCTCTGCAGCCA
3' ss Score
10
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGATTGAAGGTCTGAACTTCAAAGTCGTGCACCTGAGCCAAGAGATCAACCACCTGCAGAAGCTGTTCAGAGAAGAGACAGACATCAACGAAAGTATCCGGCATGAAGTCACCAGGCTGACATCAGAAAACATG
Seq A exon
CCACTACTTTCTGTTATGTGCTTCTCAGCAACCTGTGGCAATGCTGGCTACTCCCCTGCCTCTGAGATTGCAGAGGATCACACTCGCTGTGGCTACTTCTTCCGTCTCACTATCTGCTGTGGCTTTGCTTCTTTCCTCCTTCTCTGGCCAAACCATAAGTTGGGACATCCCCGGGGCGTCTACAGGAGCTGGAACTGTGCTGCAGTCAAAGGCCTTCGTAGGATGTGTATTCCTGGGATAAACCTTGATGAGGAACCAACAGTGAGGTATTCTGTGTGTTTGGGCCTCAGAGGCCTGTTTAAACTTAAGAGAACAGAAAGAAGAAAAAAAAAGCAACTCTTTTTATCTGGCTGGGTGTGGAAGGGATGAATATTCAAAAAGATACACAACAAAGGAGAATGGAGAGCCCCGGACGACTCCAGCTGCAGAGTGTTCTGAGATAGTGTGCCGTCCTCTTCCAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCCTGAAGGAGCAGGCTGAGAAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590-'30-32,'30-31,31-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.000 C2=0.781
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PU(23.3=72.1)
A:
NO
C2:
PF131661=AAA_13=FE(16.4=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAGCCATTTCCAGTCT
R:
TCTATCTTCTCAGCCTGCTCCT
Band lengths:
270-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: