MmuEX0030539 @ mm10
Exon Skipping
Gene
ENSMUSG00000033590 | Myo5c
Description
myosin VC [Source:MGI Symbol;Acc:MGI:2442485]
Coordinates
chr9:75286411-75288142:+
Coord C1 exon
chr9:75286411-75286591
Coord A exon
chr9:75287285-75287745
Coord C2 exon
chr9:75288049-75288142
Length
461 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCATTTTCTCTGCAGCCA
3' ss Score
10
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGATTGAAGGTCTGAACTTCAAAGTCGTGCACCTGAGCCAAGAGATCAACCACCTGCAGAAGCTGTTCAGAGAAGAGACAGACATCAACGAAAGTATCCGGCATGAAGTCACCAGGCTGACATCAGAAAACATG
Seq A exon
CCACTACTTTCTGTTATGTGCTTCTCAGCAACCTGTGGCAATGCTGGCTACTCCCCTGCCTCTGAGATTGCAGAGGATCACACTCGCTGTGGCTACTTCTTCCGTCTCACTATCTGCTGTGGCTTTGCTTCTTTCCTCCTTCTCTGGCCAAACCATAAGTTGGGACATCCCCGGGGCGTCTACAGGAGCTGGAACTGTGCTGCAGTCAAAGGCCTTCGTAGGATGTGTATTCCTGGGATAAACCTTGATGAGGAACCAACAGTGAGGTATTCTGTGTGTTTGGGCCTCAGAGGCCTGTTTAAACTTAAGAGAACAGAAAGAAGAAAAAAAAAGCAACTCTTTTTATCTGGCTGGGTGTGGAAGGGATGAATATTCAAAAAGATACACAACAAAGGAGAATGGAGAGCCCCGGACGACTCCAGCTGCAGAGTGTTCTGAGATAGTGTGCCGTCCTCTTCCAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTTGAATCCCGCCTGAAGGAGCAGGCTGAGAAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033590_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.000 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000036555fB2614
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGAGCCATTTCCAGTCT
R:
TCTATCTTCTCAGCCTGCTCCT
Band lengths:
270-731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types