RnoEX0057440 @ rn6
Exon Skipping
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82229551-82231346:+
Coord C1 exon
chr8:82229551-82229731
Coord A exon
chr8:82230485-82230755
Coord C2 exon
chr8:82231253-82231346
Length
271 bp
Sequences
Splice sites
3' ss Seq
GACCTTCATTTTCTCTGCAGCCA
3' ss Score
9.45
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
CGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGATTGAAGGTCTGAACTTCAAAGTCGTGCATCTGAGCCAAGAAATCAACCACCTGCAGAAGCTGTTCAGAGAAGAGACAGACATCAATGAAAGTATTCGTCATGAAGTCACCAGGCTGACATCAGAAAACATG
Seq A exon
CCACCCCGCTCTGTTAAGTGCTTCTCAGCAACTCGTGGCTACTCCCCTGCCTCTGGGATTGCAGAGGATCTCACACACCCACTGATGCTACTACTTCGATCTCACTATGTGCTGCGGCTCTGCTTCTTTCTTCTTCCTCTGGCCAAATCATAAGTTGGGACACTCAGGGCTACATCCCCAGGGAGTCTACAGGAGCAGGAACTGTGCTTCATAGGCTTGTGTATACCTGGGATAAACCCTGATGGGGAACGACAGTGAGATCTTCTAAGAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTCGAATCCCGCCTGAAGGAGCAGGCGGAGAAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=0.000 C2=0.906
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PU(23.9=73.8)
A:
NO
C2:
PF131661=AAA_13=FE(16.5=100)
Main Inclusion Isoform:
ENSRNOT00000011768fB9264
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGGAGAGCCATTTCCA
R:
ATCTTCTCCGCCTGCTCCTTC
Band lengths:
270-541
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]