RnoINT0097313 @ rn6
Intron Retention
Gene
ENSRNOG00000008356 | Myo5c
Description
myosin VC [Source:RGD Symbol;Acc:1309994]
Coordinates
chr8:82229551-82231346:+
Coord C1 exon
chr8:82229551-82229731
Coord A exon
chr8:82229732-82231252
Coord C2 exon
chr8:82231253-82231346
Length
1521 bp
Sequences
Splice sites
5' ss Seq
ATGGTACGG
5' ss Score
8.21
3' ss Seq
TGAATCTCTCTTCTCTGAAGATG
3' ss Score
7.11
Exon sequences
Seq C1 exon
CGTTCTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAAGAGATTGAAGGTCTGAACTTCAAAGTCGTGCATCTGAGCCAAGAAATCAACCACCTGCAGAAGCTGTTCAGAGAAGAGACAGACATCAATGAAAGTATTCGTCATGAAGTCACCAGGCTGACATCAGAAAACATG
Seq A exon
GTACGGCCTCACCGTGCCTGCTTATCAACATTGTCCCAGAGACGTTCTTCACCGGCGGAGCAAAAATCAGCTCTCGGCAGCTAAACAACTCGCTTTAACTAGTTCTTTAGTGATAAATAACTAGGTCAGAAGATAGATCTACACAGTGTCCTCAGGACAGAAAACACTCGGATTCCAGAGTGTTTGATTACCATGTGGTGGATTCAAATTGTGTGAATGAGTTTACTTTTATATGTTTAATTCCAGCCCCAAACTCCTGTAAAGAAACAAAATGCAGATCAAGGCAAAAGTGTGGTTCTTGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAAAAAAGAACCAAAAAAAAAAAAAAAGTGTGGTTCTTGAGAGGGAACACGTTCATGTCAGTCCATCTCTTCATCCCTCAAATATCCCCTGAGTCTCCCCTTCTTCTTGTGTTTATCTGGTCTTTTCTTCTCATTTGTACCTGTGGAATGCTTTCAGGACACACACACACATGCACACACACATACACATACACGCACACACACATACACACACACACACACACACACACACAGAGTCCTTTCAAGATACACACATACACATGCTTTCTTGTCTACGATATCTTGTGGCCACCATCCCATGTCTTTGTGAGTTGATGGGTCTTCTCAAAGGTCAGTAACCACTCTTCCACGTGACCTTCATTTTCTCTGCAGCCACCCCGCTCTGTTAAGTGCTTCTCAGCAACTCGTGGCTACTCCCCTGCCTCTGGGATTGCAGAGGATCTCACACACCCACTGATGCTACTACTTCGATCTCACTATGTGCTGCGGCTCTGCTTCTTTCTTCTTCCTCTGGCCAAATCATAAGTTGGGACACTCAGGGCTACATCCCCAGGGAGTCTACAGGAGCAGGAACTGTGCTTCATAGGCTTGTGTATACCTGGGATAAACCCTGATGGGGAACGACAGTGAGATCTTCTAAGAGGTATTCTGTGTTTGGGTTTTAGAAGCCTGGGTGTCTGTTTAAACTCAGAGAACAGAAAACAAACAAATGAACAAAACCAAAAAAACTCTTTTTACCTGGGTGGGGGTGGGAGGGATGAACATCTAACAAAGGAGAGTGGCTATGGAGACCACTCCAACTGCAGAATGTTCTGAGATGGAGTGGCCTCTTTCAGGTGAGATGGTATGGCCGCACACTGGAGCGCCTCAGCACAGGGCACCCTTCCCTTCCCACAAAGCACCTTTTGCCTTTCCAGGATAGCCATGTGAGAACATCTCTCTCTGAGCATGCTAGGATTTCTTGAGACCACCACATAGGTCTTCAGCTGAAGGGGGAGAGAGTGGATGTAATGCAATGCATTGCAGTGCCTCAGCTTTACACAGCCCAAGTATTCCACAAGCTCAACAAGGAGAGGGGTGGGTGTTTTCGAGAGCATAAAGATCCGGACTCAAGCACTGATGAATCTCTCTTCTCTGAAG
Seq C2 exon
ATGATCCCAGACTTTAAGCAGCAGATTTCAGAGCTGGAGAGGCAGAAGCAGGATCTCGAATCCCGCCTGAAGGAGCAGGCGGAGAAGATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008356:ENSRNOT00000011768:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.193 A=NA C2=0.906
Domain overlap (PFAM):
C1:
PF131661=AAA_13=PU(23.9=73.8)
A:
NA
C2:
PF131661=AAA_13=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTCTGGAGAGCCATTTCCA
R:
ATCTTCTCCGCCTGCTCCTTC
Band lengths:
270-1791
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]