GgaINT1018788 @ galGal4
Intron Retention
Gene
ENSGALG00000004641 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr10:8354245-8355782:+
Coord C1 exon
chr10:8354245-8354425
Coord A exon
chr10:8354426-8355683
Coord C2 exon
chr10:8355684-8355782
Length
1258 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
3' ss Seq
CTTTTTTTTTCCTCTGGAAGGTG
3' ss Score
7.97
Exon sequences
Seq C1 exon
AGTATTGGAAAGTCACTTCCAGACTCAGAAGGAAAACTATGAAAAGGAGATTGAAGGTTTGAACTTGAAAGTTGAGCATCTTAGCCAAGATATTAATCATCTACAAAAACTATTTCGAGAGGAAAATGACATCAATGATGGTATTCGACTTGAAGTTAGCAGGCTGACTTCAGAAAACCTG
Seq A exon
GTAAGATGGAGTTGTAGTCAAGCCAAGTATGTTGCAGTTACCTGGCAGTGCAATCCAAAGCTGCTGGTGGCACAAAGCCCTCACGGGCTTGGCGCCGTGTCTTGACTTTACATGGCTCAAACAGATGAGGCCATCTGAGGTTGCACATCCACACCAACTTTTTCCCATGTAATGTCTTGCTCTGCTATAAAAACTGAAGTAGGGGAAGAAGAAACAAAGTGTGTTTGGCTTCAGAGTGGCTGCTGTTGGAGCACTGGTGTGACTGTGTGTGCTTAGGGTGAGTGATTGGCTTTGCTCTGCTTGCTGGTTTTCGTTTGCTTGTTTTTTCCCTTCATGTATTCAATGAATTTTATCTTGATCCACAGGCTTTCCCATTTGTGCTCTTCCTATTCTCTCCTTTCTTTTTTTGCACTGGGGTGGGAGGGTGGTGGTGGTGGTGAGTTGGCAGCTCTGTGGTTGCTTGACTTCGGTCAGAGGCCAAGCCACGACAACGAGCTAATCCAGGATTTAGGTATGCTCTTCTCCCCTCGTGGTCAAAGGGTAGAAATTAGCATCTTTTGGTCTGAAGCCTCTCTTTTCTCTCAGGTTGAAAAGTCCTATGATTTAATGTCAGTGAAAACAGATGCCTGGGGATGTCAGTGGTGATGGATTTGTGTAGTTTAGCGGTGCTCTCCACCAGAGGGCAGCTGACCACATAAAGTTGCTAATAAATCGCAGGCAAGGCTTAAAAGTCAAAATGGTCATCAGTGCTGTGTGAAACCTGGCTCAGGGAAGTGCTACTATGCCAGAAGGTCGTACATGCCACGTTATTTTCCTGCTACGTGAAGTATAGCTATAGAAATATTTTCAGAACAAAATTACTGCAATTGAAAACATAAGGTAAAGGAGCTTGTGATGTTAGTTTTAAAAGATGATTTTATAACGTACTGATTTTCCTCCCCCCCCCCCCCCCCCCAAAGTTAATTGAGCTGGGAGAATTGATTGTGTGATAGCCTTTTAACTGCAGAACGTAAAAATGGCAGCACTGGGTCGGTTCAGACATTTAGTTAGCTCACTGTTTCATTCTTAAGGATGGCCCAGCAGCAATTGCGTCCAGAAAAGTTGCACAAGTTGGGCAAGCAAGTAGCACTCTCCAAGTATACCTGCCAGTATTTAACTACTTGCAGTTGAAGGTCTTCTGATCTCATAGATACTATTGGAGATGTTTCAAACTAAAGGTGCTGAGATACAAAAATGTCCTTTTTTTTTCCTCTGGAAG
Seq C2 exon
GTGATCCCAGACCTTAAACAGCAAGTTTCTGAGCTTGAGAATCAAAAATTAGACCTTGAAAACCGTCTTCAAGAGCAGACTGCAAAGTTGAAAGGTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004641:ENSGALT00000007393:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.485
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTATTGGAAAGTCACTTCCAGACTC
R:
TACCTTTCAACTTTGCAGTCTGCT
Band lengths:
278-1536
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]