HsaINT0108853 @ hg38
Intron Retention
Gene
ENSG00000128833 | MYO5C
Description
myosin VC [Source:HGNC Symbol;Acc:HGNC:7604]
Coordinates
chr15:52221162-52223724:-
Coord C1 exon
chr15:52223544-52223724
Coord A exon
chr15:52221256-52223543
Coord C2 exon
chr15:52221162-52221255
Length
2288 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGG
5' ss Score
6.63
3' ss Seq
TTTCTAATTCTTCTCTAAAGATG
3' ss Score
6.87
Exon sequences
Seq C1 exon
TGTTTTGGAGAGCCATTTCCAGTCTCAGAAGGATTGCTATGAAAAGGAGATTGAAGCTTTGAACTTCAAAGTGGTGCATCTCAGTCAAGAAATCAACCACCTGCAGAAGTTATTCAGAGAAGAAAATGACATCAATGAAAGCATCCGTCATGAAGTTACCAGGCTAACATCAGAGAACATG
Seq A exon
GTATGGTCTCAGCCAGGGGCCCCAGTCGTGGCCATCATACTAGAGTTGTTCTTTGTCAGTGGCGTCAAATTCAGTTTCTTGGCAGTAAAAGAGTGGATATAAATTACTTTTTCCAGAAGTGAAATAACTTGGTCTGGTGATTAAACTATAAAATGACTGCAGACCAGAGAGCACTCTGATACAAGAGTGTGTGTGTTCACCACAGGATGGCTGCAGGCGCTGTGATTGTCTGTGTGTGCGCGTAAGTGTGTATGTTTTAAAGCCTGTATATTTAAATCAAGCCCTAACCCCTTGGAAAGTGACCACAAAATTGAAGGGTAGCTCTTGAGACAGGAGTGTGTCAGAAGGCCAGTCCTGCTCATGCCTGAAATCTCACCTTTTTTTTTTTTTTTTTTGAGATGAAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCATCACGGTCAGCTAATTTTGCATTTTTAGTAGAGACAGGGTTTCACTATGTGGGCAAGGCTAGTCTCGAACTCCTGACCTCGTGATCCGCCTGCCTCAGCCTCCCAAAGTGGCATAAGCCACCGTGCCCGGCCTTCAAATCTCACCTTTTCAAGGGCTTCCTCTTCCATGACGTGCATTCCTAGCCACTGCATTTGTCTCATTCTTTCTTCCAACTCATGCCTACTGGCCTGGAGAAATGCTTTAGGAATCTCCTCATTCAAAAAGCCATCTCTGTCTTAACCCCACACTGCTGTGGCCATCACCCATTTCTTTGGGGTCTTAGTCAGACTTACAAAGACCCTCTAGGCATACTTCCTCCGCACACCTCCCATTCACTGCCCACCACCCCATTCTGTCGTGTGTCCCCACCACTGGCTGACTCTGCCTGCACAGAGCTGAGCACTAAGGGTTCCTTTGCACCCTCATCTTACTCAGTGTCTCAGCAGCCTCTGGCGATGCTAATCTTGCCCTCTCTGCCTTGTTCTCTTGGCTTCCAGGACGCCCCGCTCTCCCAGCATTCTTGTCCCGCCTCACTGGCTGCTGCTCCCCTACTTCCTTACTACCCCCTCCTCTCCCTAAACTGAGAGTGTTAGGAAATCTCGGGGCTGTAGCAGCAGTTGAGGACCAGGGGTGGACACAGGGAACGGTAGTGGGGGACCTTTACATCTTTGTTTATTCCTTGGATGAAACTTTAATGAGGAATTTGCAGTGAGACCCAATTGCACATTCAAACAAGTACAGATGCTCCTCAGCTTACCATGGGGCTACGTCCCAATAAACCCATCGTATGCTGGAAGTATTGTATTGTAAGTTGAAAATGCATATAATACACCTGACCTACCAAGCATCGTAGCTTAGCCCAGCCTGCCTTAAACGTGCTCAGAATGCTTACATTAGCCTGTACTTGGGCAAAATCATCTAACACAAAGCCTATTTTTATAATAAAGTGTTGAATGTCTCATGTAACTTATCAAATACTATACTGAAAGTGAAACACAGAATGGTTGAATGGGTACTTGAAGTATGGTTTCTACTAAATGCATATCACTTTCACACCATCACAAACTCGAAAAATAGTAAGTTGAGCCATCGTAAATCAGGGGCTGTCTGTATTCTTCATTTAGACTTCAGAGGCCTGGATCTCAGCCACTCAGTTTTAAAATGAGCATGTTTATAAACTTGGGGAAGGAAAAAAAACCCTGTTTTAACCTAACTGGGGGTGGAGGCGATGGACATGTAAAGAAATATACAGATAGGGACAAAGGATTGAGAAACTTACCGGGTGATTCCAGACCTCCACTAACAGAGCAGTGCATGTCCTTGAATTCAAAAGTAGCAGTGGGACCCTTTGAGATGGCTTTTCCTGTTCCTAGATGAGGAGACGATGGCTCTGGGCTTGGACCAAAGACGCTGGCTGCCATTTCTTCACCTAATTCCTCCCTCAACTCAGCATAGGATTTCTATACATGTACACATCCTTCTCTCCCTGTCGTAGCTGTGTGAGAACTGCTTCCTCTGAGCATACTGGTGTTTCCTGAGACTATATAGGTTTTGAGGTTAAAAAAAAATGTTAATCCAGTCTAATGTCGTGGCTAGCTCTTTTACACAGCTATCTGTTCTGCAGGCTGAACACCAAGATAGTTCAGTTTGCTTCTAAGATTTTAAAGTTCATAGATAAAAGTATTTTATATTCTAATATTTCTAATTCTTCTCTAAAG
Seq C2 exon
ATGATCCCAGACTTTAAACAGCAAATTTCAGAATTGGAGAAACAGAAGCAAGATCTTGAAATCCGCCTGAATGAACAAGCTGAGAAAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128833:ENST00000261839:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.142 A=NA C2=0.385
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139001=GVQW=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development