MmuEX0030573 @ mm10
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:98106992-98117775:-
Coord C1 exon
chr7:98117716-98117775
Coord A exon
chr7:98112165-98112201
Coord C2 exon
chr7:98106992-98107105
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGGTACCTCATCTTGTTTAGATA
3' ss Score
6.08
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGCTGTGTCTGGTCACTCCGGCAGGTGTGCTGACGTAGAAGCATGGTTATTCTGCAGAAG
Seq A exon
ATACCGGGACACAGGAATGCTGCCAAGGTCCTACAAG
Seq C2 exon
GGGGACTATGTATGGATGGACCTGAAGTCAGGCCAGGAGTTTGATGTGCCCATCGGGGCCGTGGTGAAGCTCTGCGACTCGGGCCAGATCCAGGTGGTGGATGATGAAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGCTGACGTAGAAGC
R:
GAGTCGCAGAGCTTCACCAC
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types