MmuEX0030573 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105255502-105266285:-
Coord C1 exon
chr7:105266226-105266285
Coord A exon
chr7:105260675-105260711
Coord C2 exon
chr7:105255502-105255615
Length
37 bp
Sequences
Splice sites
3' ss Seq
TGGTACCTCATCTTGTTTAGATA
3' ss Score
6.08
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGCTGTGTCTGGTCACTCCGGCAGGTGTGCTGACGTAGAAGCATGGTTATTCTGCAGAAG
Seq A exon
ATACCGGGACACAGGAATGCTGCCAAGGTCCTACAAG
Seq C2 exon
GGGGACTATGTATGGATGGACCTGAAGTCAGGCCAGGAGTTTGATGTGCCCATCGGGGCCGTGGTGAAGCTCTGCGACTCGGGCCAGATCCAGGTGGTGGATGATGAAGACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGTGCTGACGTAGAAGC
R:
GAGTCGCAGAGCTTCACCAC
Band lengths:
119-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: