MmuEX0031356 @ mm10
Exon Skipping
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17374185-17530017:-
Coord C1 exon
chr2:17529910-17530017
Coord A exon
chr2:17390812-17390916
Coord C2 exon
chr2:17374185-17374356
Length
105 bp
Sequences
Splice sites
3' ss Seq
TAATCATTTTATAATTTTAGAGA
3' ss Score
5.92
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTCAAGTACAAAAGAGATTTTGAAGAAAGCAAAGGCAGGGGCTTCAGCATTGTCACAGATACTCCTGAGCTGCAGAGGCTGAAGAGGACCCAGGAGCAGATCAGTAAT
Seq A exon
AGAAAGTATAAAGATGAAGCTGAGAAAATGCTTTCCAACTACTCCACTGTGGCAGTCACTCCCGAGATTCAGAGAATCAAGACGACACAGCAAAATATTAGCAAT
Seq C2 exon
GTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702_MULTIEX2-22/27=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.313 A=0.356 C2=0.352
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=30.6),PF0088013=Nebulin=PU(55.2=44.4)
A:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(64.0=45.7)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAAAGCAAAGGCAGGGG
R:
TGATCCCAGGTCTTCTGTCCA
Band lengths:
254-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types