GgaEX0028354 @ galGal4

Exon Skipping

Gene

ENSGALG00000007943 | lasp-2

Description

nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]

Coordinates

chr2:18211563-18225701:+

Coord C1 exon

chr2:18211563-18211673

Coord A exon

chr2:18212133-18212237

Coord C2 exon

chr2:18225530-18225701

Length

105 bp

Sequences

Splice sites

3' ss Seq

ATTTTAAAATTATTTTTCAGAAA

3' ss Score

8.48

5' ss Seq

TCAGTGAGT

5' ss Score

7.68

Exon sequences

Seq C1 exon

AAAGAATATAGAAAAGATCTGGAGACTGAAATTATAGGAAAAGGGATGCAAGTTGGTCCATTTACACCTGAAATACAACGTGTCAAAAGAGCTTCAGAAATAGCAAGCCAG

Seq A exon

AAAATGTACAAAGATGAAGCAGAGAAGATGCTCTGTAACTATTCTGCTGTCCCTGACACTCCAGAGATGGAGAGGATAAAAAGCACTCAGAAAAACATCAGTTCA

Seq C2 exon

GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000007943_MULTIEX1-21/26=20-C2

Average complexity

C3

Mappability confidence:

83%=100=86%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.486 A=0.571 C2=0.428

Domain overlap (PFAM):

C1:

PF0088013=Nebulin=PD(35.7=27.0),PF0088013=Nebulin=PU(57.1=43.2)

A:

PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(69.6=45.7)

C2:

PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)

Main Inclusion Isoform:

ENSGALP00000012888

Main Skipping Isoform:

ENSGALT00000012901fB1254

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Other assemblies

galGal3

Conservation

Human

(hg38)

chr10:20828530-20828634

ALTERNATIVE

HsaEX0042368

(NEBL)

Human

(hg19)

chr10:21117459-21117563

ALTERNATIVE

HsaEX0042368

(NEBL)

Mouse

(mm10)

chr2:17390812-17390916

ALTERNATIVE

MmuEX0031356

(Nebl)

Mouse

(mm9)

chr2:17312439-17312543

ALTERNATIVE

MmuEX0031356

(Nebl)

Rat

(rn6)

chr17:84179961-84180065

ALTERNATIVE

RnoEX0059039

(Nebl)

Cow

(bosTau6)

chr13:22427224-22427328

ALTERNATIVE

BtaEX0024201

(NEBL)

Zebrafish

(danRer10)

chr9:23007696-23007800

HIGH PSI

DreEX0050002

(neb)

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

AAAGGGATGCAAGTTGGTCCA

R:

ACAATTATTCCAGGTCTTCTATCCA

Band lengths:

242-347

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Special

GgaEX0028354 @ galGal4

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]