GgaALTD0003113-4/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18224271-18225701:+
Coord C1 exon
chr2:18224271-18224304
Coord A exon
chr2:18224305-18224456
Coord C2 exon
chr2:18225530-18225701
Length
152 bp
Sequences
Splice sites
5' ss Seq
TAGGTAACT
5' ss Score
6.43
3' ss Seq
GATTCCTCTTGTTTTCCTAGGTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTGAAGTACAGCAGTGATCAGAGGCAGATGAAAG
Seq A exon
GTAGACGTAGTGTGATTCTAGACACACCTGAGCTAAGGCATGTCAAAGAAACACAAAACAACATCTCAATGGTAGGGTCCTTCTTCCTATAACTAGAATATACTAAGGAATGGCACTTGACTTCCACTGGATTTTGCCTTCCATTAATATAG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-41-44,42-44,43-44,44-44-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-3/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX0028355
- GgaEX1066197
- GgaEX1066198
- GgaEX1066199
- GgaEX1066200
- GgaINT1030833
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTACAGCAGTGATCAGAGGCA
R:
CAACAATTATTCCAGGTCTTCTATCC
Band lengths:
202-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]