GgaEX1066200 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18163820-18225701:+
Coord C1 exon
chr2:18163820-18163899
Coord A exon
chr2:18164746-18164787
Coord C2 exon
chr2:18225530-18225701
Length
42 bp
Sequences
Splice sites
3' ss Seq
TGCGAGTATCTGTCACTCAGGAA
3' ss Score
3.81
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ATGCATACACTGTGACACCATATCCACTGGAATAAGGATGTATTTCAGTTTCATGCTAGCTGGACTTCATCGCAGGAAAG
Seq A exon
GAATTCACAGAGGATGAAAATGAGAATGGAGAAGAAGAAAGG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-6/26=5-C2
Average complexity
C3*
Mappability confidence:
96%=100=96%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=1.000 C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(5.3=20.0)
A:
NO
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Inclusion Isoform:
ENSGALT00000012901fB14153
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-3/4
- GgaALTD0003113-4/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX0028355
- GgaEX1066197
- GgaEX1066198
- GgaEX1066199
- GgaEX7001767
- GgaEX7001768
- GgaINT1030833
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCTGGACTTCATCGCAGGA
R:
GCTGCATCACTTACAACTTGGG
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]