GgaEX1066199 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18126858-18225701:+
Coord C1 exon
chr2:18126858-18126958
Coord A exon
chr2:18163820-18163899
Coord C2 exon
chr2:18225530-18225701
Length
80 bp
Sequences
Splice sites
3' ss Seq
TGTACTTACGTGTTTTACAGATG
3' ss Score
10.47
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TGAAGGAGAAGAATAGCATGAAAGGAAACAAGAAAAACTGATTGCCGCGTGCATGTCTACATTTCACAAAACCTGCCATGGCACATCAACGAAGAGACTGG
Seq A exon
ATGCATACACTGTGACACCATATCCACTGGAATAAGGATGTATTTCAGTTTCATGCTAGCTGGACTTCATCGCAGGAAAG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-5/26=4-C2
Average complexity
C3
Mappability confidence:
96%=100=96%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.750 C2=0.428
Domain overlap (PFAM):
C1:
NA
A:
PF0088013=Nebulin=PD(5.3=20.0)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Inclusion Isoform:
ENSGALT00000012901fB14152
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-3/4
- GgaALTD0003113-4/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX0028355
- GgaEX1066197
- GgaEX1066198
- GgaEX1066200
- GgaEX7001767
- GgaEX7001768
- GgaINT1030833
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAACTGATTGCCGCGTG
R:
CAACTTGGGTGTTTTTCCGCA
Band lengths:
171-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]