GgaEX0028355 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18212133-18225701:+
Coord C1 exon
chr2:18212133-18212237
Coord A exon
chr2:18216122-18216214
Coord C2 exon
chr2:18225530-18225701
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGGTAAATAAAGGTG
3' ss Score
2.84
5' ss Seq
TCGGTAAGT
5' ss Score
11.78
Exon sequences
Seq C1 exon
AAAATGTACAAAGATGAAGCAGAGAAGATGCTCTGTAACTATTCTGCTGTCCCTGACACTCCAGAGATGGAGAGGATAAAAAGCACTCAGAAAAACATCAGTTCA
Seq A exon
GTGTTTTATAAGAAGGTGGTAGGAGCTGGCACAGCTGTTAAAGAGACTCCAGAGATTGAAAGAGTAAAGAAAAATCAGCAGAATATTAGTTCG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-22/26=21-C2
Average complexity
C3
Mappability confidence:
80%=100=83%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=0.581 C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(35.7=28.6),PF0088013=Nebulin=PU(69.6=45.7)
A:
PF0088013=Nebulin=PD(21.7=16.1),PF0088013=Nebulin=PU(59.3=51.6)
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
ENSGALT00000012901fB1254
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-3/4
- GgaALTD0003113-4/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX1066197
- GgaEX1066198
- GgaEX1066199
- GgaEX1066200
- GgaEX7001767
- GgaEX7001768
- GgaINT1030833
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGACACTCCAGAGATGGA
R:
TGCACCCCTTTATATGCTGCA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]