GgaALTD0003113-3/4 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18224271-18225701:+
Coord C1 exon
chr2:18224271-18224304
Coord A exon
chr2:18224305-18224375
Coord C2 exon
chr2:18225530-18225701
Length
71 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
GATTCCTCTTGTTTTCCTAGGTT
3' ss Score
9.33
Exon sequences
Seq C1 exon
GTGAAGTACAGCAGTGATCAGAGGCAGATGAAAG
Seq A exon
GTAGACGTAGTGTGATTCTAGACACACCTGAGCTAAGGCATGTCAAAGAAACACAAAACAACATCTCAATG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-41-44,42-44,43-44,44-44-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.886 A=NA C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-4/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX0028355
- GgaEX1066197
- GgaEX1066198
- GgaEX1066199
- GgaEX1066200
- GgaINT1030833
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCAGTGATCAGAGGCAGA
R:
TCAACTATATGTGGGTGCACC
Band lengths:
170-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]