RnoALTD0019779-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000049452 | Nebl
Description
nebulette [Source:RGD Symbol;Acc:1308315]
Coordinates
chr17:84165901-84167045:-
Coord C1 exon
chr17:84167012-84167045
Coord A exon
chr17:84166941-84167011
Coord C2 exon
chr17:84165901-84166072
Length
71 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
AATAATAATTTCTTTTTCAGGTC
3' ss Score
10.68
Exon sequences
Seq C1 exon
GTGAAATACACTCAGGACCATAAACAAATGAAAG
Seq A exon
GTAGACCATGTGTGATCTTAGATACACCTGCTTTGAGACATGTAAAAGAAGCACAAAATCATGTTTCCATG
Seq C2 exon
GTCAAATATCATGAAGATTTTGAGAAGACGAAGGGAAGAGGCTTCACTCCTGTTGTGGACGATCCTGTGACGGAGCGGGTGAGGAAGAACACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTACAGCCTCATGTTGTGGAGATGGATAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049452-66-53,67-53-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=NA C2=0.416
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCAGGACCATAAACAAATGA
R:
CACAACATGAGGCTGTACCCC
Band lengths:
168-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]