MmuALTD1030940-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000053702 | Nebl
Description
nebulette [Source:MGI Symbol;Acc:MGI:1921353]
Coordinates
chr2:17374185-17375320:-
Coord C1 exon
chr2:17375287-17375320
Coord A exon
chr2:17375216-17375286
Coord C2 exon
chr2:17374185-17374356
Length
71 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
AAGGATAATTTCTTTTGCAGGTC
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTGAAATACACTCAGGACCATAAACAAATGAAAG
Seq A exon
GTAGACCGTGTCTGATCTTAGATACACCGGCTTTGAGACATGTTAAAGAAGCACAAAATAATGTTTCCATG
Seq C2 exon
GTCAAATACCATGAAGATTTTGAGAAGACAAAGGGAAGAGGCTTCACTCCCGTTGTGGATGATCCTGTGACTGAACGGGTGAGGAAGAGCACCCAGGTTGTGAGCGATGCTGCCTATAAAGGGGTCCAGCCACATGTTGTGGAGATGGACAGAAGACCTGGGATCATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053702-64-69,65-69-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.271 A=NA C2=0.352
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(37.9=31.4),PF0088013=Nebulin=PU(55.2=45.7)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=37.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAATACACTCAGGACCATAAACA
R:
ACATGTGGCTGGACCCCTTTA
Band lengths:
171-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types