GgaEX0028352 @ galGal4

Exon Skipping

Gene

ENSGALG00000007943 | lasp-2

Description

nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]

Coordinates

chr2:18210374-18225701:+

Coord C1 exon

chr2:18210374-18210484

Coord A exon

chr2:18211125-18211235

Coord C2 exon

chr2:18225530-18225701

Length

111 bp

Sequences

Splice sites

3' ss Seq

GCTAATAATATTATTTTCAGAAA

3' ss Score

3.98

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

AAACAATACAAGAAAGACCTGGAAACTGAAATTAAAGGGAAGGGCATGCAAGTTGGTCCAGATACTCCTGAGATAAGACGAGCCAAGAAAGCTTCTGAAATTGCAAGCACT

Seq A exon

AAAGAGTATAAGAAAGACTTGGAGAATGAAATTAAAGGAAAGGGAATGGAAGTGGGCATGGATACCCCTGATATACAACGAGCAAAGAAAGCTTCTGAAATTGTAAGCCAG

Seq C2 exon

GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000007943_MULTIEX1-19/26=18-C2

Average complexity

C3

Mappability confidence:

88%=100=78%

Protein Impact

Alternative protein isoforms (No Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.730 A=0.811 C2=0.428

Domain overlap (PFAM):

C1:

PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(55.2=43.2)

A:

PF0088013=Nebulin=PD(37.9=29.7),PF0088013=Nebulin=PU(57.1=43.2)

C2:

PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)

Main Inclusion Isoform:

ENSGALP00000012888

Main Skipping Isoform:

ENSGALT00000012901fB1254

Other Inclusion Isoforms:

NA

Other Skipping Isoforms:

NA

Other assemblies

galGal3

Conservation

Human

(hg38)

chr10:20831196-20831306

ALTERNATIVE

HsaEX0042367

(NEBL)

Human

(hg19)

chr10:21120125-21120235

ALTERNATIVE

HsaEX0042367

(NEBL)

Mouse

(mm10)

chr2:17392918-17393028

ALTERNATIVE

MmuEX0031355

(Nebl)

Mouse

(mm9)

chr2:17314545-17314655

ALTERNATIVE

MmuEX0031355

(Nebl)

Rat

(rn6)

chr17:84182024-84182134

ALTERNATIVE

RnoEX0059038

(Nebl)

Cow

(bosTau6)

chr13:22433116-22433226

ALTERNATIVE

BtaEX0024200

(NEBL)

Zebrafish

(danRer10)

chr9:23010927-23011031

HIGH PSI

DreEX0050013

(neb)

Fruitfly

(dm6)

No conservation detected

Primers PCR

Suggestions for RT-PCR validation

F:

AAAGGGAAGGGCATGCAAGTT

R:

ATTCCAGGTCTTCTATCCATTTCA

Band lengths:

242-353

Functional annotations

(Submit an annotation)

There are 0 annotated functions for this event

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]

Special

GgaEX0028352 @ galGal4

GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]