GgaEX7001768 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18220307-18221984:+
Coord C1 exon
chr2:18220307-18220399
Coord A exon
chr2:18220781-18220873
Coord C2 exon
chr2:18221892-18221984
Length
93 bp
Sequences
Splice sites
3' ss Seq
CCTTATGCCTTATTTACTAGGTT
3' ss Score
8.32
5' ss Seq
ATGGGAAGT
5' ss Score
3.37
Exon sequences
Seq C1 exon
ATTAAATACAAAGAAGAAACTCAGCATGCAACTCCTATTTCTGATCCACCCGAACTAAGGAGAATCAAGGAAAACCAGAAGAATATAAGCAAT
Seq A exon
GTTCACTATAAAGAGCAGCTCTGCAGGGCTACACCTGTGAGTGTCACTCCAGAGATTGAAAGAGTCAAGAGGAATCAAGAGAATGTCAGCATG
Seq C2 exon
GTTCACTACAGAGAGCAGCCTGGCAAAGCTACTGCTGTGAGCATCACTCCTGAGATAGAGAGAGTCAAGAAGAATCAAGACAATATCAGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943-'35-41,'35-40,37-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.677 C2=1.000
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(33.3=29.0),PF0088013=Nebulin=PU(66.7=51.6)
A:
PF0088013=Nebulin=PD(25.0=19.4),PF0088013=Nebulin=PU(55.2=51.6)
C2:
PF0088013=Nebulin=PD(37.9=35.5),PF0088013=Nebulin=PU(55.2=51.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACTCAGCATGCAACTCCT
R:
CGAGCTGATATTGTCTTGATTCTTCT
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]