GgaEX1066198 @ galGal4
Exon Skipping
Gene
ENSGALG00000007943 | lasp-2
Description
nebulette non-muscle isoform [Source:RefSeq peptide;Acc:NP_989819]
Coordinates
chr2:18124260-18225701:+
Coord C1 exon
chr2:18124260-18124342
Coord A exon
chr2:18126858-18126958
Coord C2 exon
chr2:18225530-18225701
Length
101 bp
Sequences
Splice sites
3' ss Seq
TTCCCTGCATTGAACTCAAGTGA
3' ss Score
0.58
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TTTTGTTTTGATTTCATCTTGAAGTATTAGAAAGTTCTCAAAGAGCCTATTTGAAACAAAATTGTAACTGCTTCCTTGAAAGG
Seq A exon
TGAAGGAGAAGAATAGCATGAAAGGAAACAAGAAAAACTGATTGCCGCGTGCATGTCTACATTTCACAAAACCTGCCATGGCACATCAACGAAGAGACTGG
Seq C2 exon
GTTAAATATCATGAAGATTTTGAGAAGACAAAGGGCAGGGGTTTCACGCCAGTGGTGGATGATCCTATAACAGAGCGGGTGCGGAAAAACACCCAAGTTGTAAGTGATGCAGCATATAAAGGGGTGCACCCACATATAGTTGAAATGGATAGAAGACCTGGAATAATTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007943_MULTIEX1-4/26=3-C2
Average complexity
C3*
Mappability confidence:
96%=100=96%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.428
Domain overlap (PFAM):
C1:
PF0088013=Nebulin=PD(5.3=10.0)
A:
NA
C2:
PF0088013=Nebulin=PD(37.9=19.0),PF0088013=Nebulin=WD(100=41.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
- GgaALTD0003113-3/4
- GgaALTD0003113-4/4
- GgaEX0011325
- GgaEX0011326
- GgaEX0011327
- GgaEX0011328
- GgaEX0011330
- GgaEX0011331
- GgaEX0028345
- GgaEX0028346
- GgaEX0028347
- GgaEX0028348
- GgaEX0028349
- GgaEX0028350
- GgaEX0028351
- GgaEX0028352
- GgaEX0028353
- GgaEX0028354
- GgaEX0028355
- GgaEX1066197
- GgaEX1066199
- GgaEX1066200
- GgaEX7001767
- GgaEX7001768
- GgaINT1030833
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTATTAGAAAGTTCTCAAAGAGCC
R:
CAACAATTATTCCAGGTCTTCTATCC
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]