MmuEX0031814 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121661525-121662210:+
Coord C1 exon
chr9:121661525-121661581
Coord A exon
chr9:121661915-121661945
Coord C2 exon
chr9:121662109-121662210
Length
31 bp
Sequences
Splice sites
3' ss Seq
TGTGATATTTTTCAATGCAGAAA
3' ss Score
7.69
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
AAAAGAAATTAACATTTCTCTCTTTAACATG
Seq C2 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.182 C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCTCCATAGCCGCTCC
R:
CTGGACCGCCTGTTGTAACTT
Band lengths:
125-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: