MmuEX0031814 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121752407-121753092:+
Coord C1 exon
chr9:121752407-121752463
Coord A exon
chr9:121752797-121752827
Coord C2 exon
chr9:121752991-121753092
Length
31 bp
Sequences
Splice sites
3' ss Seq
TGTGATATTTTTCAATGCAGAAA
3' ss Score
7.69
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
AAAAGAAATTAACATTTCTCTCTTTAACATG
Seq C2 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525_MULTIEX2-2/4=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=0.000 C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCTCCATAGCCGCTCC
R:
CTGGACCGCCTGTTGTAACTT
Band lengths:
125-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types