MmuINT0108805 @ mm10
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121752407-121753092:+
Coord C1 exon
chr9:121752407-121752463
Coord A exon
chr9:121752464-121752990
Coord C2 exon
chr9:121752991-121753092
Length
527 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
GTAAGTGCTGCTGGGAGGCCCAGAGTGCTGGGTAGGGGTTGGCTTGTGCTGCTGGGGATTGATCCCAGGGCCTCTGGCACAAAATACAGCACATCTACTGCCATGGATCTTATTCTTTAGCCTAAATGATGCATTTCTAATTAAGTAACTTTAATGCATATTTTTTCTAAAATTACACATACACAAAAAGATCTTGTAATTTTTATCTGTTGGTTCATTGTACTCCAGTCAGAAATGACAATATCTGTCATTTCTTGTGAATATAATTATCCAATAAAACCAAGATTCAATCACACTAACTCCATGTTAATTTTGTGATATTTTTCAATGCAGAAAAGAAATTAACATTTCTCTCTTTAACATGGTAAGTCCAATTGGGTGCAATTGCTGGATGTTCCTAGAACTTCTTATGCAACTGTCCTCACACCTCCGGAGAGTACCCGTGTGAGCCAGCACCCTCTGATGGCCCTAAAAAAGAGCCTTTCTGTATTTGAATGGAACACTGTGTGTCATTGCTATTTAAGCAG
Seq C2 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525:ENSMUST00000035112:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.925 A=NA C2=0.905
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types