GgaINT0091037 @ galGal3
Intron Retention
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1866249-1866968:+
Coord C1 exon
chr2:1866249-1866308
Coord A exon
chr2:1866309-1866878
Coord C2 exon
chr2:1866879-1866968
Length
570 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTCTTTTCCCATTAAAGTAGGTC
3' ss Score
5.44
Exon sequences
Seq C1 exon
TCGAACCTATAGTAGAAGCAGATCCAGAAGTAGTTCTTATGGTCACCACAGTCGATCCAG
Seq A exon
GTATGGGTGGTAGTTCTGTAACAACTCTGAAATAACCGTACTTAATACAAAAATATCTTAGTATAAGAATACCCCTTTGTCTGTAGTACTTATAATTAAACTTCTTGTGATAGCAACTTCAACCAAAGCAAAATGAGCGTAAATGAGACACTTTGAACATAACAAAATCGTGTCATAAATAACAGTGAACATGTTTCCCTTTTTTGTTAGAATGAAATTGGAAATATAAATTAGGATAGTTTTGTTACTTGTTTTCAGAAGCATTAACAAACAAGTTGTTTTCCTTCATTGGCTGTTTGCAGTGAAAAATCAGAACCTTTTAAATGCTTAGTAAGTCCTGTAGATTCATAAATTTAAGATTATATTTCTTCTTTTGAAGATATTTAATTCTGACATTAAACTTCTATGAAAATGTAGTATTATCTCATTTTCCACATCCTTCAAGAGTAAGTTCTATATAGCAATTTATTTCTTTGTCTATAAATGTCTTTAAAACATGTGTTTAACATAAATGGCATTCTAGACCTGTGACTGTAAATCAACAGTGGCTTTCTTTTCCCATTAAAGTAG
Seq C2 exon
GTCATACACCTATGATAGTTACTATAGCAGAAGTCGAAGTAGAAGGAGTGACAGCTATCGAAGATCTAGAAGTTATGACAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282:ENSGALT00000015998:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]