MmuINT0108805 @ mm9
Intron Retention
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121661525-121662210:+
Coord C1 exon
chr9:121661525-121661581
Coord A exon
chr9:121661582-121662108
Coord C2 exon
chr9:121662109-121662210
Length
527 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
GTAAGTGCTGCTGGGAGGCCCAGAGTGCTGGGTAGGGGTTGGCTTGTGCTGCTGGGGATTGATCCCAGGGCCTCTGGCACAAAATACAGCACATCTACTGCCATGGATCTTATTCTTTAGCCTAAATGATGCATTTCTAATTAAGTAACTTTAATGCATATTTTTTCTAAAATTACACATACACAAAAAGATCTTGTAATTTTTATCTGTTGGTTCATTGTACTCCAGTCAGAAATGACAATATCTGTCATTTCTTGTGAATATAATTATCCAATAAAACCAAGATTCAATCACACTAACTCCATGTTAATTTTGTGATATTTTTCAATGCAGAAAAGAAATTAACATTTCTCTCTTTAACATGGTAAGTCCAATTGGGTGCAATTGCTGGATGTTCCTAGAACTTCTTATGCAACTGTCCTCACACCTCCGGAGAGTACCCGTGTGAGCCAGCACCCTCTGATGGCCCTAAAAAAGAGCCTTTCTGTATTTGAATGGAACACTGTGTGTCATTGCTATTTAAGCAG
Seq C2 exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-Nktr:NM_010918:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: