DreINT0104754 @ danRer10
Intron Retention
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20499901-20500148:-
Coord C1 exon
chr24:20500092-20500148
Coord A exon
chr24:20499994-20500091
Coord C2 exon
chr24:20499901-20499993
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TTCGGTTCTTGGATGTACAGGTC
3' ss Score
4.23
Exon sequences
Seq C1 exon
CCGCACACACAGTAGGAGTTGCTCTAGGGGTCGGTATAGAGGTCGTTACAGATCAAG
Seq A exon
GTAAGCATGGTGCCAAATTATGAATAAACTTTGATTGTAATTTGATGTCATAAACAATTTGTGTTTTTTCTTTTCCTTTTCGGTTCTTGGATGTACAG
Seq C2 exon
GTCAGACTCTTACGATAGTTATTCTAGCCACAGCCGCAGTCGTAGCAGAAGAAGAGGGCATCGGAGAAGCAAAAGCTCTGATCGCAGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097:ENSDART00000127923:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACACACAGTAGGAGTTG
R:
GGACCTGCGATCAGAGCTTTT
Band lengths:
148-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]