BtaINT0102030 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15416350-15416959:+
Coord C1 exon
chr22:15416350-15416406
Coord A exon
chr22:15416407-15416857
Coord C2 exon
chr22:15416858-15416959
Length
451 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TGTTATTGCTGTTAAAGCAGGTC
3' ss Score
2.4
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCCTATGATCCTCACAGCCGGTCCAG
Seq A exon
GTATGGACAGGGCCTGGGAAACCACCCCTTAATTCCCTTTTTAAAGGTGTTGTATTTCATGGGAAAACATGTCTTTGACTTTTTAAAACAGTTTTTATTTGTTGACCCATTTTTCTCTAGTGTCAAAAGTGATAGTTGATGTCAAATTGTAATGGCAGGGGTTTATTGACTATAATTGCCTATAAGATGCACCAGATTCAATTGAACTAACTCAGTGTCAACTTTGTGATATTTTTCAATGCAAAAAAGAAATTAACGTTTTTCTGTTTAATGTGGTAAGTCTGATTTGGAGCAGTTATTAAATGTTTCCAGTACGTGTTATGCACATAATGTCTTCATTCTGTCATATAGTGCCCGTGTTCTATGAGGACACTTAAGAACCTAAAAAGAAATGGGAGTATATGAATATTTGAATGGGAAAATTTAGTGTTTGTTATTGCTGTTAAAGCAG
Seq C2 exon
GTCCTACACTTACGATAGCTACTATAGCAGAAGTCGGAGCCGAAGTAGAAGCCAGAGAAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795:ENSBTAT00000030863:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]