HsaINT0113805 @ hg19
Intron Retention
Gene
ENSG00000114857 | NKTR
Description
natural killer-tumor recognition sequence [Source:HGNC Symbol;Acc:7833]
Coordinates
chr3:42684831-42685495:+
Coord C1 exon
chr3:42684831-42684887
Coord A exon
chr3:42684888-42685393
Coord C2 exon
chr3:42685394-42685495
Length
506 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TGTTGTTGCCGTTAAAGCAGGTC
3' ss Score
2.49
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAG
Seq A exon
GTATGAACAGGGATTGGGAAACCACCAGTGGGGCAGAACTGAAAGATCTTGTTTTGTAAACTGTTTGTTCAAAGTGGTATTTTATTGAGTAACTAAATGCATATATTTGTCTCCTGAAACCATACCTTTTCTAAATGAGGTCTGTTCGACAAGTTTTATCTGTTGGCCCATTGTACTCCAGTGTCAAAAATGACAATATCAAATTGTAATGGCAGGTGTTTATTGAATATAATTGCCTACAGAGATCCACCAGGTTCAAACTAACTCGTTAACTTTGTGATATTTTTCAATGCAGAAAAGAAATTAACATTTTTCTCTTTAATTATGGTAAGTCTCATTTGGGGCAATTGTTAAATGTTTCCAGTACTTGTTTTGGAAATATATCCTCATGCTGTCACCTAGTGCCCATGTTCTAAGCTAGAACACTCCTGAGATCCTAAAAAGAAATAGGAACATATGAGTATCTGAGTGGGAAAATTTAGTGTTTGTTGTTGCCGTTAAAGCAG
Seq C2 exon
GTCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACCACCGAGGCAGAAGTTATAATCGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-NKTR:NM_005385:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)