HsaEX0055271 @ hg19
Exon Skipping
Gene
ENSG00000230084 | RP4-613B23.1
Description
NA
Coordinates
chr3:42665256-42695880:-
Coord C1 exon
chr3:42695486-42695880
Coord A exon
chr3:42674121-42674187
Coord C2 exon
chr3:42665256-42665304
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTCATGTTCAAGTTC
3' ss Score
6.63
5' ss Seq
TGAGTTGGT
5' ss Score
-6.26
Exon sequences
Seq C1 exon
GGGGGGCGCGGACACGCGTGGTGTGCGCGGTCCCCGTGCAGCCCGCCCTGCCGCAGGCTGCCCTCCACCCCCAGCCCCAGCTCCAGCCCCCAGCCCGTCCCCACTGCTCATATCCGAGCAGATAGACCCCGGCCCCACCCTCCCGTGCTGAGCCTCCTTTCTGCCGGGAAGTTCGTCCGGGAGTCAAACATCGCTGCCCTCCGGTTGCGCCACGGAGGGGGAGCCAGGATAGGAAGCTGCCGTGAAATCAGGAAGCTGAGCGCGCCGGGCCCCGGATCCGAACAGAAAAGGCTTCCACCCGCTCCCCTGAGGGATCCCACGCTGAGGGACTGAACCCCGCACCCCAGCCGCGCTCACCACCCCCACCCTCTCGCCTGGGCTGCTCTGACCTGGGG
Seq A exon
TTCACTTTCTGAAGATGATTCTGAAGAAGAGGAGGAATTGGAAGAGGAATCCGAGCCTTCTGAATGA
Seq C2 exon
ATTCCAGAACTGCCACTCAAAGTGCCCTATGAGGAGCTGTGGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230084_MULTIEX1-2/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGGATCCGAACAGAAAAGG
R:
TACCACAGCTCCTCATAGGGC
Band lengths:
169-236
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)