HsaEX0055271 @ hg38
Exon Skipping
Gene
ENSG00000230084 | RP4-613B23.1
Description
NA
Coordinates
chr3:42623764-42654388:-
Coord C1 exon
chr3:42653994-42654388
Coord A exon
chr3:42632629-42632695
Coord C2 exon
chr3:42623764-42623812
Length
67 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCTCATGTTCAAGTTC
3' ss Score
6.63
5' ss Seq
TGAGTTGGT
5' ss Score
-6.26
Exon sequences
Seq C1 exon
GGGGGGCGCGGACACGCGTGGTGTGCGCGGTCCCCGTGCAGCCCGCCCTGCCGCAGGCTGCCCTCCACCCCCAGCCCCAGCTCCAGCCCCCAGCCCGTCCCCACTGCTCATATCCGAGCAGATAGACCCCGGCCCCACCCTCCCGTGCTGAGCCTCCTTTCTGCCGGGAAGTTCGTCCGGGAGTCAAACATCGCTGCCCTCCGGTTGCGCCACGGAGGGGGAGCCAGGATAGGAAGCTGCCGTGAAATCAGGAAGCTGAGCGCGCCGGGCCCCGGATCCGAACAGAAAAGGCTTCCACCCGCTCCCCTGAGGGATCCCACGCTGAGGGACTGAACCCCGCACCCCAGCCGCGCTCACCACCCCCACCCTCTCGCCTGGGCTGCTCTGACCTGGGG
Seq A exon
TTCACTTTCTGAAGATGATTCTGAAGAAGAGGAGGAATTGGAAGAGGAATCCGAGCCTTCTGAATGA
Seq C2 exon
ATTCCAGAACTGCCACTCAAAGTGCCCTATGAGGAGCTGTGGTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230084-'1-8,'1-6,2-8=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCTATATGCTCTTAATCTCTGC
R:
CTTGTTACCACAGCTCCTCATAGG
Band lengths:
151-218
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development