HsaALTA1017827-3/4 @ hg38
Alternative 3'ss
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42643339-42644003:+
Coord C1 exon
chr3:42643339-42643395
Coord A exon
chr3:42643899-42643919
Coord C2 exon
chr3:42643920-42644003
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
GTTTGTTGTTGCCGTTAAAGCAG
3' ss Score
2.76
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAG
Seq A exon
CAGGTCCTACACCTACGATAG
Seq C2 exon
CTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACCACCGAGGCAGAAGTTATAATCGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-50-56,50-55,50-54,50-53-3/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATCCAGGAGCAGCTCAT
R:
ACTTCTGCCTCGGTGGTAACT
Band lengths:
110-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains