HsaEX6055329 @ hg38
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42643339-42648741:+
Coord C1 exon
chr3:42643339-42643395
Coord A exon
chr3:42643902-42644003
Coord C2 exon
chr3:42645888-42648741
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTGCCGTTAAAGCAGGTC
3' ss Score
2.49
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAG
Seq A exon
GTCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACCACCGAGGCAGAAGTTATAATCGGCGGTCCAG
Seq C2 exon
GAGTTGTAGATCTTATGGCTCTGACAGTGAAAGTGACCGAAGTTACTCTCATCACCGGAGCCCCAGTGAGAGCAGCAGATACAGTTGAAAACGTCCGGATACAAATTATATCTTATTTGTAAATATCTGGCAACTTAGCTTAAGAAATGTAATGACAGTCTGTTGTTCTATTTCAATATCAGAGGTGAATTTCAAAAATAGACACTTCTTAATTGTTACTGGTTCATTTACATGTGGGGAGAAGAATTTAAAATACAGATATGTCTCCTAAAAATATTTTTATGCCACATTTTACAGTAGCCAACTATGGAAATGAATTTCATTTTCTTGAATCAAGAAATCGTGAAATTTATCTATGTATAATTTGCAATATTATTTTAAGTCTATTTCACTCTATCTTACGTATCCCTTAGAATACAGATTCTTTTTGCCTGTTTTTCCAGTTTTAGCATATATGCTGCCAAGCATAGAACTGTGAAGGAGAACTGTTAAAGGCGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'50-58,'50-55,53-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCCCCACAGTCGATCCAG
R:
CCACATGTAAATGAACCAGTAACA
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains