MmuEX6069966 @ mm9
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121661525-121665959:+
Coord C1 exon
chr9:121661525-121661581
Coord A exon
chr9:121662109-121662210
Coord C2 exon
chr9:121663363-121665959
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCCGGTCCAGGAGCAGCTCTTATGACCTCCATAGCCGCTCCAG
Seq A exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
Seq C2 exon
GAGTGGTAGATCCTATGGCTCAGACAGTGAAAGTGACAGAAGTTACTCTCATCACCGGAGTCCCAGCGAGAGCAGCAGATACAGCTGAGATGTCTCTGTACAGATTGTGTCTTAAGTGTAAATACCTGGTAACTTAAAGCTTAAGAAACTGGATGGCAGTCTGTTGTGTTTTAGTATTAGACCTCAATCCTATAGTGGATATTTCTTGTCACTTATTTACATGTGCGCAAAAGAATTTAAAGTGCAGATGTCCCTAGAAATATTTCTATGACCCATTTTACAGTAGGCAACTATGGAATTTTCATTTTCTTGAATCAAGAAATGGTAAATTTGATGTAAGTATAATTTGCAGTGTCACTGTAGATAGGGTTTTCTGTAGATCACATTGTCTGTAGAATTCAGGTTTCTTTTTGTTTCAGGTTTTAGCATCCATGCTGCCAAACACAATTATGGAGAGCTGTCACAAGACACGTGTTCTCCATGTCCCCATGTCCCCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525-'30-32,'30-30,32-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.933 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCTCCATAGCCGCTCC
R:
TGCGCACATGTAAATAAGTGACA
Band lengths:
252-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: