GgaEX1039791 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1963147-1965795:+
Coord C1 exon
chr2:1963147-1963206
Coord A exon
chr2:1963774-1963866
Coord C2 exon
chr2:1965391-1965795
Length
93 bp
Sequences
Splice sites
3' ss Seq
GCTTTCTTTTCCCATTAAAGTAG
3' ss Score
4.38
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TCGAACCTATAGTAGAAGCAGATCCAGAAGTAGTTCTTATGGTCACCACAGTCGATCCAG
Seq A exon
TAGGTCATACACCTATGATAGTTACTATAGCAGAAGTCGAAGTAGAAGGAGTGACAGCTATCGAAGATCTAGAAGTTATGACAGAAGATCCAG
Seq C2 exon
ATCTTATGGCTCTGATAGCGAAAGCGATCGCAGTTACTCCAACAACCGAAGTCCCAGTGAGAGCAGCAGATACAGCTGAAAATGCTTCTTTGGCGATGGAAACCATATTAAATAAGTTTATCAGTGTTGCATTTAGAAAGAAAAACAAAAACTGTTCTGATGATGTCACAAGTGAAGTTGGAGAGTGTTTCCTGAGCTAACTGAAACTTTACCATTTAGCAGTGAACTCACTTGACTGTATCCATGAGGAGAGACGTACTGAAGCTCAGCTCAGTTGTTTTATGTCAAACGCTACTTTTACGAAACAGAAAAAAGTTTGATTTCCTTGAATTGGATTTTCCAAGCCATGAAAGACACGAGTGAGTTTGCTGGCACTGCTTTCTTGGTGCAGCAGTCATTACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'23-34,'23-30,24-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCACCACAGTCGATCCA
R:
TGTTTTTCTTTCTAAATGCAACACTG
Band lengths:
169-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]