BtaEX6093607 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15416350-15418568:+
Coord C1 exon
chr22:15416350-15416406
Coord A exon
chr22:15416858-15416959
Coord C2 exon
chr22:15418481-15418568
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTTATTGCTGTTAAAGCAGGTC
3' ss Score
2.4
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCCTATGATCCTCACAGCCGGTCCAG
Seq A exon
GTCCTACACTTACGATAGCTACTATAGCAGAAGTCGGAGCCGAAGTAGAAGCCAGAGAAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGATCCAG
Seq C2 exon
GAGTTGTAGATCTTATGGCTCTGACAGTGAAAGTGACCGAAGTTACTCTCATCACCGAAGTCCCAGTGAAAGCAGCAGATATAGTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'23-21,'23-20,24-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCCAGCAGGAGCAGATC
R:
TATCTGCTGCTTTCACTGGGAC
Band lengths:
138-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]