MmuEX6069966 @ mm10
Exon Skipping
Gene
ENSMUSG00000032525 | Nktr
Description
natural killer tumor recognition sequence [Source:MGI Symbol;Acc:MGI:97346]
Coordinates
chr9:121751667-121756843:+
Coord C1 exon
chr9:121751667-121751762
Coord A exon
chr9:121752991-121753092
Coord C2 exon
chr9:121754245-121756843
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATCAAGAAGCTACTCTAGAAGCCGGAGCAGGGACTGGTATAGCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGTCACAG
Seq A exon
ATCCTACACCTACGATAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
Seq C2 exon
GAGTGGTAGATCCTATGGCTCAGACAGTGAAAGTGACAGAAGTTACTCTCATCACCGGAGTCCCAGCGAGAGCAGCAGATACAGCTGAGATGTCTCTGTACAGATTGTGTCTTAAGTGTAAATACCTGGTAACTTAAAGCTTAAGAAACTGGATGGCAGTCTGTTGTGTTTTAGTATTAGACCTCAATCCTATAGTGGATATTTCTTGTCACTTATTTACATGTGCGCAAAAGAATTTAAAGTGCAGATGTCCCTAGAAATATTTCTATGACCCATTTTACAGTAGGCAACTATGGAATTTTCATTTTCTTGAATCAAGAAATGGTAAATTTGATGTAAGTATAATTTGCAGTGTCACTGTAGATAGGGTTTTCTGTAGATCACATTGTCTGTAGAATTCAGGTTTCTTTTTGTTTCAGGTTTTAGCATCCATGCTGCCAAACACAATTATGGAGAGCTGTCACAAGACACGTGTTCTCCATGTCCCCATGTCCCCATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032525_MULTIEX2-3/4=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.905 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCTAGAAGCCGGAGCAGG
R:
AACACAACAGACTGCCATCCA
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types