DreEX0050756 @ danRer10
Exon Skipping
Gene
ENSDARG00000059097 | nktr
Description
natural killer cell triggering receptor [Source:ZFIN;Acc:ZDB-GENE-030131-1725]
Coordinates
chr24:20499239-20500148:-
Coord C1 exon
chr24:20500092-20500148
Coord A exon
chr24:20499901-20499993
Coord C2 exon
chr24:20499239-20499815
Length
93 bp
Sequences
Splice sites
3' ss Seq
TTCGGTTCTTGGATGTACAGGTC
3' ss Score
4.23
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CCGCACACACAGTAGGAGTTGCTCTAGGGGTCGGTATAGAGGTCGTTACAGATCAAG
Seq A exon
GTCAGACTCTTACGATAGTTATTCTAGCCACAGCCGCAGTCGTAGCAGAAGAAGAGGGCATCGGAGAAGCAAAAGCTCTGATCGCAGGTCCAG
Seq C2 exon
GTCATATCGCTCCTACAGTCGCAGTTCCTCTAGGCGGCGAAGTCATAGTCGAAGCAGTCGATACAGCTGAGTTTAAGGCATAATGATTGGATCAATAGTTTAATTTTTGTATGGTAATTTACATACTTTCTTGTACACTGACATTATGCTGTATTTTTTTTTTTTACATTTTATGAATGAATGTACATTTGAAAAAAACTTAGTCACCACTTTTTATTCTGACACTTTTTCTGTATTCCTAGCAAAGGGAGCATAGAAACCATCCAACTGTATAGCCAAGGTTATATATAAACAGCTACTTACCTCTTACTTATCTTTGAAACATGAGAGTTTGTAAAATGTATTTCATGTTTGGAAGGATTGTAACACGCAGCTCTGTTGGTTAACATCAATGGAAAAAGTTTTGATTGGACTAAATGAATGTTTTATGTTTAATAGATTGACTTGTTTTTTTATTATTTTTATTTGTACATAAAATACTCTGAATGTATCTAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059097-'27-24,'27-23,29-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTCGGTATAGAGGTCGTT
R:
ACAGCATAATGTCAGTGTACAAGA
Band lengths:
183-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]