RnoEX0060012 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130391067-130393178:+
Coord C1 exon
chr8:130391067-130391123
Coord A exon
chr8:130391658-130391759
Coord C2 exon
chr8:130392893-130393178
Length
102 bp
Sequences
Splice sites
3' ss Seq
TGTCATTGCTATTTAAGCAGATC
3' ss Score
4.41
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GACATCCAGCAGGAGCCGGTCCAGGAGCAGCTCCTATGACCCCCACAGCCGCTCCAG
Seq A exon
ATCCTACACCTACGACAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
Seq C2 exon
GAGTATTAGGTCCTATGGCTCGGACAGTGAAAGTGACAGAAGTTACTCTCGTCACCGGAGCCCCAGTGAGAGCAGCAGATACAGCTGAGGTGTCTCTGTACAGGTTGTGTCTTAACTGTAAATACCTGGTAACTTAAAGTGTACGAAACTGGACGGCAATCTGTTGTGTGTTAGTCTTAGACCTCAATCCAGTAGTGGGTATTTCTTGTCACTTGCTTACATGTGTGCAGAAGAATTTAAAGTGCAGATGTCCCTAGAAATATTTTTATGCCCCATTTTACAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-'20-25,'20-23,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCTATGACCCCCACAG
R:
GCACACATGTAAGCAAGTGACA
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]