RnoEX0060016 @ rn6
Exon Skipping
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130390337-130391759:+
Coord C1 exon
chr8:130390337-130390432
Coord A exon
chr8:130391067-130391123
Coord C2 exon
chr8:130391658-130391759
Length
57 bp
Sequences
Splice sites
3' ss Seq
GCCTCTGTGGTCCATACCAGGAC
3' ss Score
8.09
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
ATCAAGAAGCTACTCTAGAAGCCGAAGCAGGGGCTGGTATAGCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGCCACAG
Seq A exon
GACATCCAGCAGGAGCCGGTCCAGGAGCAGCTCCTATGACCCCCACAGCCGCTCCAG
Seq C2 exon
ATCCTACACCTACGACAGCTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGCAGTTCCTATGGAAG
R:
CTGGACCGCCTGTTGTAACTT
Band lengths:
138-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]