RnoINT0101352 @ rn6
Intron Retention
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130390337-130391123:+
Coord C1 exon
chr8:130390337-130390432
Coord A exon
chr8:130390433-130391066
Coord C2 exon
chr8:130391067-130391123
Length
634 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GCCTCTGTGGTCCATACCAGGAC
3' ss Score
8.09
Exon sequences
Seq C1 exon
ATCAAGAAGCTACTCTAGAAGCCGAAGCAGGGGCTGGTATAGCAGAGGCCGAACCCGCAGCCGGAGCAGTTCCTATGGAAGTTTCCATAGCCACAG
Seq A exon
GTAAGCTTGTGGTCTCATCCTGCTGAGTGGTATCCAGTCACTTAGAGTAGACCACTTCTGGGACACAGCAGGACAGCTGTTAGTCTGTCCTTGTCAAATACCACCCTAAGCTGTTTTCTTATCCAGCTCTCTGAGAGCTCTGGAACTTTGCGTGGCTGTTCCTTGATGAGATCTTACCAGAGTAAGGTAAAGAAGCAATTGACTTGAGAGGTCATGCCACTCCTACCTGCTCTGTGCATAGATGTCACTGAGGTCACAAGCACAGTCACCTCTTCTTGACCTATTGAGGGGTTACAATAGGCTATATCGAGGAAACCACGAGGAAAGTGAGTGCTGGGCCAAGGTTTTCTATTTCCCTGCTGCTGCTCTCTTTGGCCTTGTGATATTTTCTGCTGTGACCACTCATGTAAGTGGGCCTTCTCCCTTCCCACTCAGTGGAGAGGAGAACTCCCTAAAGCTTAATCTTCTGATGGAATACAAAGGTTTTCAAAAGAGATTCCAGTATACTTGAGGTGAACACAAAATAGTTAAGTCATTTCACTGTATTTTCACATTGATGGGCAAAAAATGTCTAGATTGTTACTGTGGCCTGTGCCCTAATGCACAAGGTGACAGCCTCTGTGGTCCATACCAG
Seq C2 exon
GACATCCAGCAGGAGCCGGTCCAGGAGCAGCTCCTATGACCCCCACAGCCGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128:ENSRNOT00000071152:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]