RnoALTA0026530-3/3 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000049128 | Nktr
Description
natural killer cell triggering receptor [Source:RGD Symbol;Acc:2321593]
Coordinates
chr8:130391067-130391759:+
Coord C1 exon
chr8:130391067-130391123
Coord A exon
chr8:130391655-130391675
Coord C2 exon
chr8:130391676-130391759
Length
21 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTGTGTCATTGCTATTTAAGCAG
3' ss Score
3.63
Exon sequences
Seq C1 exon
GACATCCAGCAGGAGCCGGTCCAGGAGCAGCTCCTATGACCCCCACAGCCGCTCCAG
Seq A exon
CAGATCCTACACCTACGACAG
Seq C2 exon
CTACTACAGCCGGAGTCGTAGCCGCAGCCGCAGCCAGAGGAGTGACAGTTACCATCGGGGTAGAAGTTACAACAGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049128-20-24,20-23,20-22-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCTATGACCCCCACAG
R:
CTGGACCGCCTGTTGTAACTT
Band lengths:
114-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]