BtaALTA0020039-2/3 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15416350-15416959:+
Coord C1 exon
chr22:15416350-15416406
Coord A exon
chr22:15416855-15416857
Coord C2 exon
chr22:15416858-15416959
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GTTTGTTATTGCTGTTAAAGCAG
3' ss Score
2.73
Exon sequences
Seq C1 exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCCTATGATCCTCACAGCCGGTCCAG
Seq A exon
CAG
Seq C2 exon
GTCCTACACTTACGATAGCTACTATAGCAGAAGTCGGAGCCGAAGTAGAAGCCAGAGAAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-23-20,23-19,23-18-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTATGATCCTCACAGCCGG
R:
TGCCTCGGTGATAACTGTCAC
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development