GgaALTA0002671-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000005282 | NKTR
Description
NA
Coordinates
chr2:1866249-1866968:+
Coord C1 exon
chr2:1866249-1866308
Coord A exon
chr2:1866876-1866878
Coord C2 exon
chr2:1866879-1866968
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GCTTTCTTTTCCCATTAAAGTAG
3' ss Score
4.38
Exon sequences
Seq C1 exon
TCGAACCTATAGTAGAAGCAGATCCAGAAGTAGTTCTTATGGTCACCACAGTCGATCCAG
Seq A exon
TAG
Seq C2 exon
GTCATACACCTATGATAGTTACTATAGCAGAAGTCGAAGTAGAAGGAGTGACAGCTATCGAAGATCTAGAAGTTATGACAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-19-25,19-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCACCACAGTCGATCCA
R:
TCTAGATCTTCGATAGCTGTCACTCC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]