BtaEX6093608 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002795 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr22:15415868-15416959:+
Coord C1 exon
chr22:15415868-15415963
Coord A exon
chr22:15416350-15416406
Coord C2 exon
chr22:15416858-15416959
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCTCATGTGGTTACTCTTAGGAC
3' ss Score
6.41
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ATCAAGAAGCTACTCTAGAAGTCGGAGCAGAGGGTGGTATAGCAGAGGCCGCACAAGGAGCCGGAGCAGTTCCTACCGCAGTTACAAAAGTCATAG
Seq A exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCCTATGATCCTCACAGCCGGTCCAG
Seq C2 exon
GTCCTACACTTACGATAGCTACTATAGCAGAAGTCGGAGCCGAAGTAGAAGCCAGAGAAGTGACAGTTATCACCGAGGCAGAAGCTACAATAGGCGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002795-'21-20,'21-17,23-20=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAGTCGGAGCAGAGGGTG
R:
TCTCTGGCTTCTACTTCGGCT
Band lengths:
139-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]