HsaEX6055330 @ hg38
Exon Skipping
Gene
ENSG00000114857 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr3:42642501-42644003:+
Coord C1 exon
chr3:42642501-42642596
Coord A exon
chr3:42643339-42643395
Coord C2 exon
chr3:42643902-42644003
Length
57 bp
Sequences
Splice sites
3' ss Seq
CTTCATGTGATTAATATTAGGAC
3' ss Score
5.13
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATCAAGAAGCTACTCTAGAAGTCGGAGCAGAGGATGGTACAGCAGAGGCCGAACCAGAAGCCGGAGCAGTTCCTACCGGAGTTACAAAAGTCACAG
Seq A exon
GACGTCCAGCAGGAGCAGATCCAGGAGCAGCTCATATGATCCCCACAGTCGATCCAG
Seq C2 exon
GTCCTACACCTACGATAGCTACTATAGCAGGAGTCGGAGTCGAAGTAGAAGCCAGAGAAGTGACAGTTACCACCGAGGCAGAAGTTATAATCGGCGGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114857-'49-55,'49-48,50-55
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGTCGGAGCAGAGGATGG
R:
TGGCTTCTACTTCGACTCCGA
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains