GgaEX1039790 @ galGal4
Exon Skipping
Gene
ENSGALG00000005282 | NKTR
Description
natural killer cell triggering receptor [Source:HGNC Symbol;Acc:HGNC:7833]
Coordinates
chr2:1962717-1963866:+
Coord C1 exon
chr2:1962717-1962812
Coord A exon
chr2:1963147-1963206
Coord C2 exon
chr2:1963774-1963866
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTGTTTGTTTTTAGTCG
3' ss Score
8.91
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GTCGAGAAGCTATACGAGAAGCAGAAGTAGAGGCTGGTACAGCAGAGACCGGTCAAGAAGCCGGAGTAGTTCTTACCACAGTTACAAAAGTCGTAG
Seq A exon
TCGAACCTATAGTAGAAGCAGATCCAGAAGTAGTTCTTATGGTCACCACAGTCGATCCAG
Seq C2 exon
TAGGTCATACACCTATGATAGTTACTATAGCAGAAGTCGAAGTAGAAGGAGTGACAGCTATCGAAGATCTAGAAGTTATGACAGAAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005282-'22-30,'22-29,23-30
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAGAAGCAGAAGTAGAGGCT
R:
AGCTGTCACTCCTTCTACTTCGA
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]